The Mosher Lab

Public Data and Tools (under construction!)
Here, you will find links to short read data from our publications, as well as analytical tools we have developed – helping you find the right tree in a forest of information.

Gymnosperm transcriptomes
Assembled transcriptomes from Huang Y et al, 2015: Pinus canariensis: GBLJ00000000
Ephedra trifurca: GBKT00000000
Cycas revoluta: GBJU00000000
Brassica rapa epigenomes
Data from Grover JW et al, 2018:
sRNA-seq from RdDM mutant leaves and ovules: SRP114437
sRNA-seq from intraspecific seeds: SRP114469
RNA-seq from brnrpd1 mutant ovules and seeds: SRP132223
Data from Grover JW et al, 2020: PRJNA588293
-
RNA-seq and sRNA-seq from dissected seed tissues of intraspecific crosses
-
Bisulfite-seq of RdDM mutant leaves and ovules
-
sRNA and RNAseq from various seed stages

Data from Chakraborty T et al, 2021:
Bisulfite-seq data from mature embryos of wild type and RdDM mutants: PRJNA657007
Data from Burgess et al, 2022:
RNA-seq from rdr2 and nrpe1 ovules and young seeds: PRJNA808098
Rice sRNAs


Snakemake workflows
Data from Burgess et al, 2022:
RNA-seq from dissected RdDM mutant ovules and young seeds: PRJNA808098
CoGe web-based HTS analysis
Data from Grover JW et al, 2018:
sRNA-seq from RdDM mutant leaves and ovules: SRP114437
sRNA-seq from intraspecific seeds: SRP114469
RNA-seq from brnrpd1 mutant ovules and seeds: SRP132223
